rs107671349 SNP Detail

Summary

• ID
  rs107671349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAAAGAG CTTATCAAGG CCATTCTGGG GAGAGAACAG
  AATAGCGGGA TGCTGCCCTC AATGCAGATA GTAAAAAAGC AGGCTCATGA ATTTGCAGAC
  R
  GAATGATGAC TCTATCTGGA ATTAGGCTAA ATGCACCATG CTGTACCATT CTGGTAAAGA
  ACTTGTCTTC ATTTTGTCCA AACTCTGACC CTGTGGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147514228	ENSMUSSNP3607079	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320498556	CHEV_2_126756331	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107671349					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr564422	regulatory region 564422			1734 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1565 bp downstream
Tssr26084	transcription start site region 26084			1306 bp downstream