rs107671598 SNP Detail

Summary

• ID
  rs107671598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGCTAT TGCTCTCTAA
  ACAGAATCTA TATCCTGCCC ATTTTAGACA CTTTGAGGGC CAATACAATA TAGTTATGTC
  TGCGAGTCCT TAATTTTAGG GGGTACATTT CTTAGATGAA TAACCTTTCA CAGATATTGA
  ATTTTTTAAA AATGCAGTAT TGGTCTTACT TAGAGTTCTC ACAGTGAATG GTAATGACAT
  Y
  AGGCTTTCCA CTCACAGAAA TAAAACATGC TCTCTGTAGA AGCTAGGAGT GACAGTCTTC
  CCATCTCCTC TTCCCCCATG ATTTTCCTGT ATTATCTGGA CATTAAAATA CCACTGTATA
  ACCAGGAGAC ACTAAAGTTA ACTGGTCACA TTGGCATGTC AATACAAACA TATATATATA
  TATATATATA TATATATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146651385	ENSMUSSNP7036427	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107671598					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551860 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24212	transcription start site region 24212	1015 bp downstream
Tssr24213	transcription start site region 24213	1120 bp downstream
Tssr24214	transcription start site region 24214	1154 bp downstream