rs107674267 SNP Detail

Summary

• ID
  rs107674267
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTGCGAGG GGAAAAGGTT GCCCCGCGAG GGCAAAGGGA
  AAGAGGCTAG CAGTGGTCAT TGTCCCGACG GTGTGGTGGT CTGTTGGCCG AGGTGAGTCT
  G
  GGGGGCTCGT CCGGCCCTGT CGTCCTTCGG GAAGGCGCGT GTTGGGGCCT GCCGGAGTGC
  CGAGGTGGGT ACCCTGGCGG TGGGATTAAC CCCGCGCGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385444	CHEV_17_39982169	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107674267					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	1130 bp upstream
Tssr144602	transcription start site region 144602	1123 bp upstream
Tssr144603	transcription start site region 144603	1228 bp upstream
Tssr144604	transcription start site region 144604	1286 bp upstream
Tssr144605	transcription start site region 144605	1336 bp upstream
Tssr144606	transcription start site region 144606	1394 bp upstream
Tssr144607	transcription start site region 144607	1503 bp upstream
Tssr144608	transcription start site region 144608	1650 bp upstream
Tssr144609	transcription start site region 144609	1794 bp upstream
Tssr144610	transcription start site region 144610	1953 bp upstream
Tssr148051	transcription start site region 148051	1895 bp upstream
Tssr148052	transcription start site region 148052	1681 bp upstream
Tssr148053	transcription start site region 148053	1575 bp upstream
Tssr148054	transcription start site region 148054	1063 bp upstream
Tssr148055	transcription start site region 148055	814 bp upstream
Tssr148056	transcription start site region 148056	466 bp upstream
Tssr148057	transcription start site region 148057	74 bp upstream
Tssr148058	transcription start site region 148058	519 bp downstream
Tssr148059	transcription start site region 148059	554 bp downstream
Tssr148060	transcription start site region 148060	675 bp downstream
Tssr148061	transcription start site region 148061	784 bp downstream
Tssr148062	transcription start site region 148062	1299 bp downstream
Tssr148063	transcription start site region 148063	1430 bp downstream
Tssr148064	transcription start site region 148064	1672 bp downstream