rs107677859 SNP Detail

Summary

• ID
  rs107677859
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:85304760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTTTCTCT CTCTGTGTCT GTCTGTCTGT CTGTCTGTCT
  GTCTCTGTCT CTGTCTCTCA CTCTGCCTCT CTCTCTGTCT CTCTCTCTGT CTCTGTCTCT
  C
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTGTCTC TCTCTCTCTC TCTGTCTGAC
  TCTTCGCCTC ATCACCCCCA AATCTATCCC CTCTCATTAT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144854175	ENSMUSSNP5091647	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs107677859					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85304760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm2619	predicted gene 2619			Intron
				Noncoding-Transcript-Variant
Gm16025	predicted gene 16025			within coordinates
Rr414357	regulatory region 414357			299 bp proximal
Tssr137	transcription start site region 137			323 bp downstream