rs107681003 SNP Detail

Summary

• ID
  rs107681003
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66214298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGGCTAA GCAGCCTGGA
  GGAGGCCTCT CAGACTGCCC CCCAATAAAC ATCATCTTCT CTAACGTTGA TTGAAGGGGG
  GGGGTGTCTT TTGTCACGTG ACAGGAAGCT GACTGACACA GACTCTCAGT CGGCTACAAG
  CTCCAGACAT ATGCATGAAG TTATTGTGTA CTCCCTCCTC CTCTCCTCTA TCTCCCCCCC
  M
  CCCTCCCGTT CTGGGCACAG GGATAGACTC TGAAGGCTTG AGAGCTGCCA GGAACCAGGA
  ATGCTTCAAA CTTGAGCCGT TTCTGCCCCG CTAGAGCTAC GCTGGCTTCT AACCACTTCA
  AACACACAGT GGAGTGCCCA AAGCAATGTA ACCTTGCTGG CTGTAGAAGT CTGCAAAACC
  AGAGAAAAAC TGGAGTCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398788699	MGP_WTSI_17_66256643	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107681003					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398788699	MGP_WTSI_17_66256643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66214298 () rs orientation: forward

Symbol	Name	Function Class
Gm49871	predicted gene, 49871	within coordinates
Gm65032	predicted gene, 65032	within coordinates
Rr340106	regulatory region 340106	497 bp distal
Rr340107	regulatory region 340107	within coordinates