rs107683839 SNP Detail

Summary

• ID
  rs107683839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAGGAATTGA TGTCTTGAAA CATTGGCATA GCATTTGCAT
  TTCATTTGAA TATTCATTAC CACATTTGCA TGCAGACAAG CCAAAGATTT GTGAGTTTAT
  S
  AATTATTAAA AAACAGGAAG TGACCTCAGC CTGAGGTCCA GACAGGAAGT AGCCCCACCA
  CGAGTTCTAG ACAGGAAGTG ATCCCGGGGT CACATGGTAG A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134041043	ENSMUSSNP7169306	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107683839					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194855 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	270 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	557 bp upstream
Rr689518	regulatory region 689518	934 bp distal
Rr689519	regulatory region 689519	67 bp proximal
Rr689520	regulatory region 689520	935 bp proximal
Rr689521	regulatory region 689521	1051 bp proximal
Rr689522	regulatory region 689522	1952 bp proximal
Tssr3091	transcription start site region 3091	1864 bp downstream
Tssr3092	transcription start site region 3092	1836 bp downstream
Tssr3093	transcription start site region 3093	1816 bp downstream
Tssr3094	transcription start site region 3094	1764 bp upstream
Tssr3095	transcription start site region 3095	1563 bp upstream
Tssr3096	transcription start site region 3096	1483 bp upstream
Tssr3097	transcription start site region 3097	1407 bp upstream
Tssr3098	transcription start site region 3098	1056 bp upstream
Tssr3099	transcription start site region 3099	953 bp upstream
Tssr3100	transcription start site region 3100	928 bp upstream
Tssr3101	transcription start site region 3101	816 bp upstream
Tssr3102	transcription start site region 3102	673 bp upstream
Tssr3103	transcription start site region 3103	631 bp upstream
Tssr3104	transcription start site region 3104	539 bp upstream
Tssr3105	transcription start site region 3105	429 bp upstream