rs107684053 SNP Detail

Summary

• ID
  rs107684053
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31425939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGATGGGGCT CTGGATTCAA TCCCTGGCGC CACAAAAAGA
  AAAGAAAGAA AAGAGATGAG ACGAGTCGAG ACGAGACGAG ACGAGACGAG ACGAGAAGAA
  A
  AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA
  AGAGAAGAGA AGAGAAGAGA AGAAGAGAGA AGAGAAGAGA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145458088	ENSMUSSNP823165	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107684053					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31425939 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	461 bp proximal
Rr370213	regulatory region 370213	1808 bp downstream
Rr370214	regulatory region 370214	856 bp upstream
Tssr143654	transcription start site region 143654	1084 bp upstream
Tssr147277	transcription start site region 147277	1832 bp downstream
Tssr147278	transcription start site region 147278	1848 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	908 bp upstream