rs107688085 SNP Detail

Summary

• ID
  rs107688085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG AGAATTAGCT GTGTCTGTGA
  Y
  GTCATAAGTT ACCAGGCAGA CAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147250081	ENSMUSSNP4696398	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325640669	CHEV_18_60966362	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107688085					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939780 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1967 bp proximal
Rr405670	regulatory region 405670	1549 bp downstream
Rr405671	regulatory region 405671	751 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	963 bp upstream
Tssr151328	transcription start site region 151328	1691 bp downstream
Tssr151329	transcription start site region 151329	1620 bp downstream
Tssr151330	transcription start site region 151330	740 bp downstream
Tssr151331	transcription start site region 151331	721 bp downstream
Tssr151332	transcription start site region 151332	289 bp upstream
Tssr151333	transcription start site region 151333	827 bp upstream
Tssr151334	transcription start site region 151334	1191 bp upstream
Tssr151335	transcription start site region 151335	1200 bp upstream
Tssr151336	transcription start site region 151336	1234 bp upstream
Tssr151337	transcription start site region 151337	1288 bp upstream
Tssr151338	transcription start site region 151338	1344 bp upstream
Tssr151339	transcription start site region 151339	1523 bp upstream
Tssr153493	transcription start site region 153493	1347 bp downstream
Tssr153494	transcription start site region 153494	1369 bp downstream
Tssr153495	transcription start site region 153495	1585 bp downstream