rs107692132 SNP Detail

Summary

• ID
  rs107692132
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6181954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCAGCTT CTGCTTCAGT
  AATTCACCAT CATATTAAGG CCATCCAGGA AGAAGTGTTA TGTCTTGTAT TTTAGTTGGA
  ATTGGAGTAG TCCTTCCTTT CTGCATTATT CTGTACCCTA CGTTTAGAAT AGAGCAGAGT
  GAATAGTCTT CGAATATCCT TTTATTTTAG TCCAGAGTTT ATTTATTTAT TTATTTATTT
  W
  TTTTTTTTTT TTGCTGTCTC AAAAAGCTTT ATTTTTACTT GGTCCAAGAC TTGACAGAGG
  CTCCAGGGCG GTTACAAAGC TGCCTAGTGG CTTGAGAGGT TCATTCAGGT GGAGGTCCCA
  GGGCGGGCTG GTGCAGAGCA GAGGGGGGAG CCCCTTGGAA GGCACAGAGG CCTCCTAGTC
  GTGCTTGAGA GTGAGGCGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss130471800	NCBIM37_NT_039636_chr17_6131679	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	A	T	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	T	T	T	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs107692132					SNP	T	A	T	A	T	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	T	T	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130471800	NCBIM37_NT_039636_chr17_6131679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6181954 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	175 bp downstream
Gm55175	predicted gene, 55175	157 bp downstream
Gm66616	predicted gene, 66616	within coordinates
Rr392221	regulatory region 392221	1661 bp downstream
Rr521310	regulatory region 521310	1964 bp distal
Rr521311	regulatory region 521311	555 bp proximal
Tulp4	TUB like protein 4	within coordinates