rs107692156 SNP Detail

Summary

• ID
  rs107692156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21372148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGCAGAT GCTAAGAAGG
  ACACATTTCC ATCCTACGTT CCCTCCTCCC CAGTTTCAGT CAGAAATGAA AACTACTCTC
  TTCTCCCTCT TTTCCAGGCA AAAGAAAGGG CTGATTTTAC TAAGCAAGCA AGATGCCAAC
  AGCCTCCTCC TCCTCAGTAG TCCAAGTTTC CTTCGCTTTC AACCACCAAA AGCGCCACTT
  M
  TCCCCTATTT CCCACCCACT CCTTGCCACC CCTGAAGGTT TCCGAGTCAT CAGGGAACAC
  GAGTGGGTGA AAACAGCGCC GCCGCCTCCT CCTCCGCCTC CTCAGTGCGC CTCGGGTTCA
  GCACTGGACA GCTCCCGCCC CAGCCAACAA ATGGCAGTCA GCTGATTGAC AGAGGCGCCG
  ACCAAACAGG GCACAAGACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146347177	ENSMUSSNP4746544	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107692156					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21372148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	within coordinates
Cpgi11264	CpG island 11264	1045 bp proximal
Gm13327	predicted gene 13327	within coordinates
Gpr158	G protein-coupled receptor 158	230 bp upstream
Rr56373	regulatory region 56373	within coordinates
Tssr16468	transcription start site region 16468	195 bp upstream
Tssr16469	transcription start site region 16469	210 bp upstream
Tssr16470	transcription start site region 16470	230 bp upstream
Tssr16471	transcription start site region 16471	261 bp upstream
Tssr16472	transcription start site region 16472	484 bp upstream