rs107700703 SNP Detail

Summary

• ID
  rs107700703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85435373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCTTTGT TGATCTTAAT CAGAGGAACC AGGACTGTAA
  TGGGATCAGG AAAAAAAAAA AGCGACCGTG AGAACAGCTG GGGCAGGTCC CAACTCCCAT
  Y
  TCATCCCGCC CCCCCACCCC ATGATCTCCA ACCTCTACAG TGAGCTCCCG GGAGAGGGGC
  CAGGGTGCTG AGCATCAGAC CCCAATGGAG GAAGCCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145392403	ENSMUSSNP6070314	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322751414	CHEV_8_87232643	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107700703					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85435373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20710	CpG island 20710	1541 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	228 bp proximal
Rr187001	regulatory region 187001	172 bp distal
Rr187002	regulatory region 187002	27 bp proximal
Tssr78440	transcription start site region 78440	99 bp downstream
Tssr82127	transcription start site region 82127	228 bp upstream