CTATCATATG ATGTACAATT GCTGGGTTTT TTTTTTTCTT TTTTGGTCAT GTGATTTTCA AAGACTCACA ATCTTTTCAA AACCTGTATG TGAAGACAGC TATTTGAAAA ATATCTTGAG GGGCTAGAAA GATGGCTCAT CCCTTAAGAG CACTGGCTGT CCTTCCAGAG GTCTCACTTC AGTCCCAGCA ACCACATGGT R GCTCCAACTA TCTGTAACTC CAATTCTAGG GCATCTGTCC CCCTCTTCTG GCCTCTGCAA GCACCAGGCA TGCACTTGGT GTACAGACTT GCATGCAGGC AGAACTCACA CATAAACCTT AAGAAATTAT TTTATTAAAA AAAATCCAAC AATTCGAGTC ATGCATGAGT AGCTAAAGCC TATATTCACA GAATTCTGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss399379400 | MGP_WTSI_17_88467014 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs107703170 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss399379400 | MGP_WTSI_17_88467014 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr17:88375102 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9636 | CpG island 9636 | 1029 bp distal | ||||||
Rr333911 | regulatory region 333911 | within coordinates | ||||||
Rr333912 | regulatory region 333912 | 699 bp proximal | ||||||
Rr333913 | regulatory region 333913 | 1499 bp proximal | ||||||
Rr340317 | regulatory region 340317 | 301 bp distal | ||||||
Rr344409 | regulatory region 344409 | 589 bp proximal | ||||||
Rr370332 | regulatory region 370332 | 1087 bp downstream | ||||||
Rr405528 | regulatory region 405528 | 1274 bp downstream | ||||||
Tssr149795 | transcription start site region 149795 | 1945 bp upstream | ||||||
Tssr149796 | transcription start site region 149796 | 1843 bp upstream | ||||||
Tssr149797 | transcription start site region 149797 | 1801 bp upstream | ||||||
Tssr149798 | transcription start site region 149798 | 1681 bp upstream | ||||||
Tssr149799 | transcription start site region 149799 | 1587 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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