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rs107703170 SNP Detail
Summary
  • ID
    rs107703170
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:88375102 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTATCATATG ATGTACAATT
    GCTGGGTTTT TTTTTTTCTT TTTTGGTCAT GTGATTTTCA AAGACTCACA ATCTTTTCAA
    AACCTGTATG TGAAGACAGC TATTTGAAAA ATATCTTGAG GGGCTAGAAA GATGGCTCAT
    CCCTTAAGAG CACTGGCTGT CCTTCCAGAG GTCTCACTTC AGTCCCAGCA ACCACATGGT
    R
    GCTCCAACTA TCTGTAACTC CAATTCTAGG GCATCTGTCC CCCTCTTCTG GCCTCTGCAA
    GCACCAGGCA TGCACTTGGT GTACAGACTT GCATGCAGGC AGAACTCACA CATAAACCTT
    AAGAAATTAT TTTATTAAAA AAAATCCAAC AATTCGAGTC ATGCATGAGT AGCTAAAGCC
    TATATTCACA GAATTCTGAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399379400 MGP_WTSI_17_88467014 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs107703170 SNP A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399379400 MGP_WTSI_17_88467014 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:88375102 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9636 CpG island 9636 1029 bp distal
Rr333911 regulatory region 333911 within coordinates
Rr333912 regulatory region 333912 699 bp proximal
Rr333913 regulatory region 333913 1499 bp proximal
Rr340317 regulatory region 340317 301 bp distal
Rr344409 regulatory region 344409 589 bp proximal
Rr370332 regulatory region 370332 1087 bp downstream
Rr405528 regulatory region 405528 1274 bp downstream
Tssr149795 transcription start site region 149795 1945 bp upstream
Tssr149796 transcription start site region 149796 1843 bp upstream
Tssr149797 transcription start site region 149797 1801 bp upstream
Tssr149798 transcription start site region 149798 1681 bp upstream
Tssr149799 transcription start site region 149799 1587 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory