rs107706469 SNP Detail

Summary

• ID
  rs107706469
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41288433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AGGGGGTCTC CAGGTGAGAC
  G
  ACTGTCTCCT TTACAGAGTC AGAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322925116	CHEV_9_41185220	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107706469					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136353047	ENSMUSSNP6705540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41288433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	339 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677030	regulatory region 677030	1653 bp distal
Rr677031	regulatory region 677031	493 bp distal
Tssr84498	transcription start site region 84498	731 bp downstream
Tssr84499	transcription start site region 84499	703 bp downstream
Tssr84500	transcription start site region 84500	652 bp downstream
Tssr84501	transcription start site region 84501	640 bp downstream
Tssr84502	transcription start site region 84502	229 bp downstream
Tssr84503	transcription start site region 84503	1295 bp upstream