rs107708050 SNP Detail

Summary

• ID
  rs107708050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49343745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGGGAA GATGTTTCTT
  TTGGGCTAGG GAGATGACTC AGAGAGGACC TGGGCTTGCA TTCCAAAAAA ATCTGGACAA
  TAGTAAAAGG TCTGAGATCC TAATGTGCCT ATGGCAGGAT GCACACACCA CAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GGGGAAGAAG GAGGAGGAGG AGGAGGAGGA
  R
  GAAGAAGAAG ATGATCTTTC TATCATAGCC TAAAGTCACC CAGTCTGTGT GTGACAATGA
  GCTCAGCTGT TTCAGATCAT CAAGGAAGGC TCCTGGCTCC TGACTTCCAG AAGGTGACAA
  TGGCCCTCTT CTTGAGTGGT CTCCCACTCC ATAGACTGAA AGTATATACT TCATCTGCTT
  GTGTCTCAAA TAGCCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	WSB/EiJ
ss130675867	NCBIM37_NT_039649_chr17_49176042	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	WSB/EiJ
rs107708050					SNP	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130675867	NCBIM37_NT_039649_chr17_49176042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49343745 () rs orientation: forward

Symbol	Name	Function Class
Lrfn2	leucine rich repeat and fibronectin type III domain containing 2	within coordinates
Rr331838	regulatory region 331838	1945 bp distal
Rr337874	regulatory region 337874	373 bp proximal