rs107709709 SNP Detail

Summary

• ID
  rs107709709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179345866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGTAGCAAA GACTGATCTG GAGCTCTCTT GATAGACCAA
  GGAACCTCTC TATTTAGACC TCGAACTCAC AGGATTCTGC CCGCCTCAGC CTCCTCAGTT
  Y
  TGGAATTCAA GGTGTGCTCC ACCACGCCCA GCTTATTATG CAAATTTTAA TGCATAGTGA
  AAAAAAAAAT GGTAAGAGCC CATGAGTGGT GGCACACACC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146368913	ENSMUSSNP2490833	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107709709					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179345866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1095	CpG island 1095	158 bp distal
Rr396646	regulatory region 396646	139 bp downstream
Rr424271	regulatory region 424271	within coordinates
Rr424272	regulatory region 424272	241 bp distal
Smyd3	SET and MYND domain containing 3	260 bp upstream
Tssr15501	transcription start site region 15501	312 bp upstream
Tssr15502	transcription start site region 15502	275 bp upstream
Tssr15503	transcription start site region 15503	256 bp upstream