rs107710381 SNP Detail

Summary

• ID
  rs107710381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64698296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAATCT GTAACTACTC
  TGGAACCCAG TTTCCTCATC ACTTGCTCTA TTTTTGGGTC AAACTGCACG GACGCTGCCT
  GTGCATGCTG CATGATTTCC CAACTCACTC TCCTTGTCTT TATAGTTACT TCTCTAACAT
  GATCTTCCAG CCTGGCTGGT AGCTCATCTA GTAAGTGCTT GTCTAGCTAG CATAAAGCCC
  W
  GGCCATGTCT CAAACGAAAA GGACGTTTTC AATTTTCTAA TATATAGCAG CAGATTTTTT
  TTAAAAGCCA TCATTTATAT GCATACATCA CATTTAGCTC CATTTTAATG TGCCATACTT
  CTGTGTGCCT TATATCTGCC AAACAGATGA AGATCAACAG AGGTGACTGA ACTTGCATGA
  GTCCCTGAAT CTTTCTTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136565263	ENSMUSSNP4411457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107710381					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64698296 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	1282 bp downstream
Rr681316	regulatory region 681316	1160 bp distal
Rr681317	regulatory region 681317	2 bp distal
Rr681318	regulatory region 681318	250 bp proximal
Rr681319	regulatory region 681319	1053 bp proximal
Tssr2909	transcription start site region 2909	204 bp upstream
Tssr85622	transcription start site region 85622	1357 bp downstream
Tssr85623	transcription start site region 85623	1337 bp downstream
Tssr85624	transcription start site region 85624	47 bp downstream
Tssr90157	transcription start site region 90157	186 bp upstream