rs107710973 SNP Detail

Summary

• ID
  rs107710973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGAGA CTTCTCTGGG
  TGTGGCTGAA GACACGCCCC CCATGCGTCA ACGCCCCCCC CCCATGCGTC ACCCCCATCC
  TCACTTGGCT ATGATGGAAA CTTCCAGGCC ATTTGGGTCA TCGATGTAAT AAAATGTCTC
  TGTGGGCTCC ACCCGGACCT CAAAACTGGG CAGCACTAGG ATGGGGTATG AAGACGATGG
  Y
  GTTGGCATGG CTGCCAGGGC AGCATAAGCA CAAGGGCCTC ACCTGCTGGA TGCCCCAAGA
  CTTACCGTAT TCCTTCACCT CAAACTCTGC GGAGAAGATC TGCTTCGGCG CATGTTCGTA
  AAAGGCTCGG ATCTTCCACT GCCCCATGCT GCAAGAAGAT GAGGAATGTG GCAGAGCCTC
  CAAGAGCCTC TCCCCCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130940643	NCBIM37_NT_039649_chr17_57364392	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107710973					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130940643	NCBIM37_NT_039649_chr17_57364392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531969 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	154 bp distal
Tssr145378	transcription start site region 145378	1834 bp downstream
Tssr145379	transcription start site region 145379	1759 bp downstream
Tssr145380	transcription start site region 145380	1714 bp downstream
Tssr145381	transcription start site region 145381	1660 bp downstream
Tssr145382	transcription start site region 145382	1106 bp downstream
Tssr145383	transcription start site region 145383	1029 bp downstream
Tssr145384	transcription start site region 145384	859 bp downstream
Tssr145385	transcription start site region 145385	280 bp upstream
Tssr145386	transcription start site region 145386	1056 bp upstream
Tssr145387	transcription start site region 145387	1287 bp upstream
Tssr145388	transcription start site region 145388	1869 bp upstream
Tssr148947	transcription start site region 148947	1770 bp upstream
Tssr148948	transcription start site region 148948	1686 bp upstream
Tssr148949	transcription start site region 148949	1630 bp upstream
Tssr148950	transcription start site region 148950	1076 bp upstream
Tssr148951	transcription start site region 148951	1047 bp upstream
Tssr148952	transcription start site region 148952	987 bp upstream
Tssr148953	transcription start site region 148953	806 bp upstream
Tssr148954	transcription start site region 148954	781 bp upstream
Tssr148955	transcription start site region 148955	636 bp upstream
Tssr148956	transcription start site region 148956	603 bp upstream
Tssr148957	transcription start site region 148957	17 bp upstream
Tssr148958	transcription start site region 148958	134 bp downstream
Tssr148959	transcription start site region 148959	294 bp downstream
Tssr148960	transcription start site region 148960	1048 bp downstream
Tssr148961	transcription start site region 148961	1085 bp downstream
Tssr148962	transcription start site region 148962	1231 bp downstream
Tssr148963	transcription start site region 148963	1283 bp downstream
Tssr148964	transcription start site region 148964	1316 bp downstream
Tssr148965	transcription start site region 148965	1827 bp downstream
Tssr148966	transcription start site region 148966	1844 bp downstream