rs107715905 SNP Detail

Summary

• ID
  rs107715905
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGAATAG GGCTGAACAC
  ACTGAACATG CTTCATTCGT TCTTCTCTTT GACCACCACA CACAAACAAG ACATTGCAAT
  GCACCATTTA CATGGCATTT ATAACATATC CCAATATGTA ATATTGTAAA AACTGTAAAG
  CCATCTGGAT GCGATCAGAG TGCAAGAAGG TTGCAGAAGT TTGTGACCAC ACATGCCATG
  S
  CCTTTTATAG AGCAGTCTTA CACATCTTCA TATCTTGATA TCTGCAGCAG GCCCTGGGAC
  CCGTTCCCCA GACACAGAAG GACAGCTGGG TTAAGTAGCA AGAAGTGTTG GATTAAGTTG
  TGGATAACTG TGGACGCTGG TGCATCGAAG GTATGATGCA TGCCTGTAGT CTCAGCATTT
  AGGAGGTGGA AGCAGAAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148973455	ENSMUSSNP6505595	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss324333668	CHEV_13_46595495	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107715905					SNP	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653602 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1777 bp upstream
Cpgi5539	CpG island 5539	1657 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1551 bp proximal
Rr478916	regulatory region 478916	1733 bp proximal
Rr478917	regulatory region 478917	1834 bp proximal
Tssr119597	transcription start site region 119597	1733 bp upstream
Tssr119598	transcription start site region 119598	1772 bp upstream
Tssr119599	transcription start site region 119599	1911 bp upstream
Tssr119600	transcription start site region 119600	1923 bp upstream
Tssr119601	transcription start site region 119601	1987 bp upstream