rs107716780 SNP Detail

Summary

• ID
  rs107716780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48342454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGACTT TCACTTGCTT
  GGTTAGAGTT ACACAAAGGC ACTTTATATT ATTTGTAGCT AATGTGAAGG GTGTTGTTTC
  CTTAATTTCT TTATTGGCCC ATTTGTCATT TATATAAAGG AGGGCTACTG ATTTTTTTAA
  AGTCAATACT ACATTCATCC ACTTTGTTGA AGATGTTTAT CACCTCTAGG AGTTCTCTAG
  Y
  AGAATTTTGG AGGTCACTTA TGTATAACTA TCATGTTAAC TATGAATAGA GATACTTGAC
  TTTTTCCTTT CCAATTTGGA TCCCCTTAAT CTCCTTTAGT TCTCTTATTG ATCTAGCTAG
  AACTTTAAGT ACTATGTTGA ATAGAAAGGG AAAGAGTGGG AAGCCTTGTT TTGTCTTGAT
  TTTAGTAGAA CTGTTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149205793	ENSMUSSNP2885482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107716780					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48342454 () rs orientation: forward

Symbol	Name	Function Class
Tssr72617	transcription start site region 72617	932 bp upstream
Tssr72618	transcription start site region 72618	925 bp upstream
Tssr72619	transcription start site region 72619	899 bp upstream
Tssr72620	transcription start site region 72620	877 bp upstream