rs107720880 SNP Detail

Summary

• ID
  rs107720880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46046674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAAGGAC TGAGGCCACC AGGGAGGTGG GTAGAGAATC
  CTTCCTTGTG TAGGGCTAGT AAGTCCGGTC TCCCTGGCCT GTCCTCCCCA CCCCCCCAGC
  Y
  GCCCCCCAGG AAGTTTGCCT TTCTTTTTGA TGATTTAGAC TTAACCTGTC AGAGGGTTCG
  AAGTTAGACA ACAGGATGAA CCCAGGTGGC TTTGGGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145695621	ENSMUSSNP1969329	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325403989	CHEV_17_45872697	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107720880					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46046674 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	1904 bp upstream
Cpgi9207	CpG island 9207	1457 bp distal
Cpgi9208	CpG island 9208	590 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	within coordinates
Rr339882	regulatory region 339882	within coordinates
Rr392669	regulatory region 392669	within coordinates
Tssr144810	transcription start site region 144810	1118 bp downstream
Tssr148277	transcription start site region 148277	1900 bp upstream