rs107734773 SNP Detail

Summary

• ID
  rs107734773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125994666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCCAAGACA TTTCGCCTGT CATATAATGT GTTCTGTGGG
  AAGGGAGTCA AGTTCTGTGT TTAAAAAATG GCGGTGGTAT CTTGGATGTT TAAAAAAAAG
  R
  GGGGGGGGGG CGAGAGGGAT ATTGTACCTC ATCAAATTAT ACGATCAGTT CTTAGTACTT
  CACAAGCAAA TATTGAAAAC AGTCTTATCT GGTCCTGAAT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147495625	ENSMUSSNP1629622	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107734773					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125994666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	147 bp distal
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	742 bp upstream
Rr367293	regulatory region 367293	660 bp downstream
Rr564315	regulatory region 564315	753 bp distal
Rr564316	regulatory region 564316	595 bp distal
Rr564317	regulatory region 564317	599 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	600 bp downstream
Tssr19932	transcription start site region 19932	534 bp downstream
Tssr26028	transcription start site region 26028	785 bp upstream
Tssr26029	transcription start site region 26029	737 bp upstream
Tssr26030	transcription start site region 26030	704 bp upstream