rs107737006 SNP Detail

Summary

• ID
  rs107737006
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119823593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TATATCAATC AATCAATTAA TCAATCAGTG AAGCCTCTGT
  CCTGTCCTGT CATTCTTCAG TCTCCCCACC CTCCAGGATC CTCTCGGGGG CGTGTGTGTG
  A
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTTG TGTTGGAGAG GGGTTACAAG GGAAGGTACT
  CTAGAGTTAG CCCTTAGGAC TTTCTTGCCC TGGGGGCCTT G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149174091	ENSMUSSNP335817	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs107737006					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119823593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	1535 bp proximal
Rr619145	regulatory region 619145	within coordinates
Rr619146	regulatory region 619146	950 bp proximal
Rr619147	regulatory region 619147	1061 bp proximal
Tbx3	T-box 3	804 bp downstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr1618	transcription start site region 1618	983 bp downstream
Tssr48472	transcription start site region 48472	1329 bp upstream