rs107738378 SNP Detail

Summary

• ID
  rs107738378
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57172399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACAGTCTCTC TAAAACACGC ACACGCACAC GCACATGCAC
  ATATTCCAAG CCAGCCTGGG CTACAGTGTG ACAGTCTCTC TAAAACACAC GCACACACAC
  G
  CACACACACA CACCAATGCA AAAATAGAAA AGTTGTAAGA GGGCTCCACT TTGCACCATC
  CTGACTCTAC ACAGGCTTGA ACCGGGCACA TGCCCTTCCC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136517969	ENSMUSSNP5100982	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107738378					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57172399 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	148 bp downstream
Gm68491	predicted gene, 68491	within coordinates
Rr679625	regulatory region 679625	28 bp proximal
Tssr89773	transcription start site region 89773	673 bp downstream
Tssr89774	transcription start site region 89774	691 bp downstream