rs107740121 SNP Detail

Summary

• ID
  rs107740121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26726787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCACTG TCAGGCACAC
  TAGTACTCAG GGGGAGGCTG AGCCCCGTGG GGGTGGACTG TTTGCTGCAC AGCTCAGGGC
  AGGAAGCCGA AAACGCTTCA TATCCTCCTG AGAATACAAA GGTACATATT TTCTCATTAG
  CACCACCGAC ACAGTACCTG GAGACAAGCC ACTCACCCAC CAGGGGCTGC GAGTTTACAA
  R
  GAAGGCTTAA GGAAGTCTTT GTTATGGGAG TGAAACAAAG CCACTGACAA GCCCCTGGAG
  ACTGGACGCC GGCGCCCCCA TACTCCAGGT GGGACGCCCC TTCCCTAGCT GATGGCATAA
  GTCCTGCCAG AGCTAGAGCG TACCTTGGAG AAAGAAGACT TGAGTGGAGC GCGCCTCTCG
  GCAGAGCGCG CCCGCGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901204	MGP_WTSI_17_26644758	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107740121					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901204	MGP_WTSI_17_26644758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26726787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	463 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	723 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	619 bp upstream
Rr405113	regulatory region 405113	991 bp upstream
Rr406958	regulatory region 406958	1039 bp proximal
Tssr5044	transcription start site region 5044	1138 bp upstream
Tssr5045	transcription start site region 5045	1650 bp downstream
Tssr5046	transcription start site region 5046	1703 bp downstream
Tssr5047	transcription start site region 5047	1712 bp downstream
Tssr143230	transcription start site region 143230	1442 bp downstream
Tssr143231	transcription start site region 143231	312 bp downstream
Tssr143232	transcription start site region 143232	835 bp upstream
Tssr143233	transcription start site region 143233	884 bp upstream
Tssr143234	transcription start site region 143234	936 bp upstream
Tssr143235	transcription start site region 143235	1888 bp upstream
Tssr143236	transcription start site region 143236	1913 bp upstream
Tssr146939	transcription start site region 146939	1846 bp upstream
Tssr146940	transcription start site region 146940	1816 bp upstream
Tssr146941	transcription start site region 146941	1647 bp upstream
Tssr146942	transcription start site region 146942	1625 bp upstream
Tssr146943	transcription start site region 146943	1543 bp upstream
Tssr146944	transcription start site region 146944	1418 bp upstream
Tssr146945	transcription start site region 146945	1355 bp upstream
Tssr146946	transcription start site region 146946	1297 bp upstream
Tssr146947	transcription start site region 146947	1276 bp upstream
Tssr146948	transcription start site region 146948	1250 bp upstream
Tssr146949	transcription start site region 146949	1182 bp upstream
Tssr146950	transcription start site region 146950	641 bp upstream
Tssr146951	transcription start site region 146951	154 bp upstream
Tssr146952	transcription start site region 146952	376 bp downstream
Tssr146953	transcription start site region 146953	401 bp downstream
Tssr146954	transcription start site region 146954	650 bp downstream
Tssr146955	transcription start site region 146955	1051 bp downstream
Tssr146956	transcription start site region 146956	1681 bp downstream
Tssr146957	transcription start site region 146957	1746 bp downstream