rs107740772 SNP Detail

Summary

• ID
  rs107740772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180076009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  AGAGTCCGGA CTGTGCCACC CACCATGAGC TTGTCTTCAC ACCCCAGCTA ACAAAATCAA
  GATAATTCTC AAAGGCTCAT CTCCTAGGCG ACTGTAGATT CTGTCAAGTT CACAGTTAAC
  TATCATAGCT GTGCATTGAA AACGTGGACC TGTAAGCTCC ACTCTAGCCT AATGTCTGGG
  Y
  GACGCATTTT GAGATGGTGC CCTACGTTCA TATACCCATG GCCTCCCTGG GTTGGGTCAG
  ACTCAGGAAG GCCAGGGAAC CTCTTACCCA GTACCTCCCA CTCCTATGAC TTGTAGGGAT
  GAAGGGGTAA ACTGTACAGC CCTTAATCCT GGACACCGGA CCTGGTCAGA CAGCAACTAG
  GAAGAGAGGC GTGCAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378772	ENSMUSSNP1610238	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107740772					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180076009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1103	CpG island 1103			1698 bp proximal
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1424 bp upstream
Rr424423	regulatory region 424423			305 bp distal
Rr424424	regulatory region 424424			36 bp distal
Rr424425	regulatory region 424425			431 bp proximal
Rr424426	regulatory region 424426			1310 bp proximal