rs107744436 SNP Detail

Summary

• ID
  rs107744436
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7015457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGCTTA GTGTTAAGTA
  CCATGTTACT TTTCGCTTTA TAAAACCATG CCTTTTTTTC CATAAGGGCC TTCCTCACAG
  AGAAGCCACT GATCCATGAG GTGCACAGGG ATGGGGCTGG ATTCCACACC CCTGGCTCTC
  ATTCTATCGA GGCACACACT CCCACCTGGC TGGATGCTGT CCGTGTCTCC AGCCTACTCT
  C
  CAGCACTTTA CCAGAAGTAA TAGCAATCCG GAAGTAAGGA CAAACTCTCA AACCACAAGC
  TCTGCCATCA AAAGCTGTCC TGGGCTGAGG AGACGGCTCA GTGGGCAAGA GCCTTCTTGG
  CACAAGTGTG AAAAACCTGA GTTGAGAGTT CAAATCCACA GAAGTCATAT AAAAAGCATC
  GCTACCCAGC ACTGCGGCTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130503791	NCBIM37_NT_039636_chr17_6952407	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107744436					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130503791	NCBIM37_NT_039636_chr17_6952407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7015457 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	1857 bp distal
Rr332781	regulatory region 332781	1944 bp proximal
Rr342727	regulatory region 342727	within coordinates
Tssr142477	transcription start site region 142477	1766 bp downstream
Tssr142478	transcription start site region 142478	1742 bp downstream
Tssr146323	transcription start site region 146323	1238 bp upstream
Tssr146324	transcription start site region 146324	1190 bp upstream
Tssr146325	transcription start site region 146325	1166 bp upstream