rs107745134 SNP Detail

Summary

• ID
  rs107745134
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATTTT GCTACTGTTA
  TGAATAATAA TGTAAATATC TGATAAACAG GACATCTGAT ATACAATCAC AGTGGGGTCA
  CGACCCACAG GTTGAGAACC GCTTCTCTAG CCTCATCTAA GTTAGTTTTT AAGTTAGAGT
  CTATCCTTAG CTTAGGGCTC ACCCAATTGG ATGATGCTGC TGGCTATTGA ACCCCAGGAA
  W
  CGGCCTGTTT CTACTTACCC ATAGTTGGGA TCTTAAGTAC GCACAACCAC ACCTGGCTTC
  TTTCACCGGT TCTGAGGACA TGTGTCCCCA TGCTTGCAAG GTAAGCTGTT TACCAACTGA
  GTTCCTCAAC ATCCCCACCT CATTATCATT CCTTAATCAC AGTGTATCAT GCTCTATAAA
  CGGGCCAGTC CTCACAGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147744275	ENSMUSSNP1631425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107745134					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547537 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1149 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	227 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1182 bp downstream
Tssr40109	transcription start site region 40109	1147 bp downstream
Tssr40110	transcription start site region 40110	1124 bp downstream
Tssr40111	transcription start site region 40111	1099 bp upstream
Tssr40112	transcription start site region 40112	1127 bp upstream
Tssr40113	transcription start site region 40113	1156 bp upstream
Tssr40114	transcription start site region 40114	1478 bp upstream
Tssr40115	transcription start site region 40115	1512 bp upstream
Tssr40116	transcription start site region 40116	1552 bp upstream
Tssr44373	transcription start site region 44373	1940 bp upstream
Tssr44374	transcription start site region 44374	1094 bp upstream
Tssr44375	transcription start site region 44375	861 bp upstream
Tssr44376	transcription start site region 44376	843 bp upstream
Tssr44377	transcription start site region 44377	234 bp upstream
Tssr44378	transcription start site region 44378	113 bp upstream
Tssr44379	transcription start site region 44379	1126 bp downstream
Tssr44380	transcription start site region 44380	1138 bp downstream
Tssr44381	transcription start site region 44381	1494 bp downstream
Tssr44382	transcription start site region 44382	1513 bp downstream
Tssr44383	transcription start site region 44383	1564 bp downstream