rs107745936 SNP Detail

Summary

• ID
  rs107745936
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122580156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTCTG CCAAGTTATC
  CCACAAATTA GGATCTAGGG ATAGAAGTCT TCCCTAGGAA CTTGTCTTTG TGGTACATTC
  ATCCTGTTCC TACTGTTTGG TTTATTCGAC TGTGGTGGGA GACTTGCCTA GCAATCATGT
  CTCAACTTGC CAGACAGGAT GTCAGTTCAA CACTGAGGTC TTGGGAACTT AAACTTATTT
  K
  ACCTCTGTTC AAAATGAAAG TTTTATTCAA AATGGCTTCA GTCTGGTCCC TTCTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTCCTTC CTTCCTTCCT TCCTTTCTTT TTTTCTTCCT TCCTTCCTTC CTTCCTTTCT
  TTTTTTCTTT CTTTCTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133609446	ENSMUSSNP872417	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321934193	CHEV_6_122553215	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs107745936					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122580156 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	753 bp upstream
Rr399899	regulatory region 399899	685 bp downstream
Rr399900	regulatory region 399900	913 bp upstream
Tssr58686	transcription start site region 58686	492 bp downstream
Tssr62923	transcription start site region 62923	853 bp upstream
Tssr62924	transcription start site region 62924	797 bp upstream
Tssr62925	transcription start site region 62925	775 bp upstream
Tssr62926	transcription start site region 62926	85 bp upstream
Tssr62927	transcription start site region 62927	1179 bp downstream