rs107748268 SNP Detail

Summary

• ID
  rs107748268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7012275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAAATG AGGTCGGAGA
  GCCCACCTAA AAGTCAGAAC GAGGGCCCAG ACTGCCGTGA GTGGGCAGGG AAGACAATGC
  CTCCTGCCTT GCCCTCTGGA GAAGTTTTAT ACATTCCCAG GGCTCCCTTC CGGAGGCTGC
  AACAAGAAAG AAACCCTACA CCCTCTTACC TCCAGGGTTT CTGCTGTCTT TTATATTATA
  R
  TCTAACCTTA AAAATGTGGT TTGCTTATGT CCAAAGTAAA ATACTGGGAT TAGGCATGGC
  CACTCCTCAG CCCTGGGGAA GGATGGAGTG TCACCGCCTC CTTGTCACCC CTCAGCTCCC
  GAACTAATGC TGCCTCTGCG TTTGTGCCTA CATTGAGAGG CCCGGCTACC CTCCTCTCCT
  CCCCTCAGCG TCACTTTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397551733	MGP_WTSI_17_6949225	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107748268					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397551733	MGP_WTSI_17_6949225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7012275 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	926 bp proximal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	622 bp upstream
Tssr4995	transcription start site region 4995	1588 bp downstream
Tssr142477	transcription start site region 142477	1410 bp upstream
Tssr142478	transcription start site region 142478	1433 bp upstream
Tssr146320	transcription start site region 146320	1056 bp upstream
Tssr146321	transcription start site region 146321	1030 bp upstream
Tssr146322	transcription start site region 146322	1115 bp downstream
Tssr146323	transcription start site region 146323	1937 bp downstream
Tssr146324	transcription start site region 146324	1983 bp downstream