rs107749103 SNP Detail

Summary

• ID
  rs107749103
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57389612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACGAGG ATATTAGTGT
  CTCTGTGGAT ATAGGAGGTG GCTGTGAGCC ACTTGACATG GGTACTGGGA CTTCAACTCA
  GGTACTCTGG AAGAGCAGCA CATGCTCTTA ACCACCGAGC TGTCTCTCCA GTCCTCTAGT
  GGTTTGTCTC AGGTAGATTT TCTTTCTTTC TTTATGCGGG TTCTCACTGT GTAGCCCTGG
  M
  TGCTCATGAG CGTCTGGCTT TGTGCCTGGA AAGGGCTTGG ATGACAGGAA TAGACTACCA
  TGCTTGGCTC TAGGTCATTT GTTTATTGAG CACGGGCTCT CACGTACCCC AGGCTGTTCT
  CTAACACCAT GTAGCTCAGG ATAACCTTGA ACTCCTGTTC CTTGTGCTCC ACTGAACACT
  GAGATGCTGA CAGACATCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398570189	MGP_WTSI_17_57222035	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107749103					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570189	MGP_WTSI_17_57222035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57389612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	772 bp distal
Gm56907	predicted gene, 56907	within coordinates
Tssr145374	transcription start site region 145374	1891 bp downstream
Tssr148885	transcription start site region 148885	1987 bp upstream
Tssr148886	transcription start site region 148886	1966 bp upstream
Tssr148887	transcription start site region 148887	1950 bp upstream
Tssr148888	transcription start site region 148888	1907 bp upstream
Tssr148889	transcription start site region 148889	1883 bp upstream
Tssr148890	transcription start site region 148890	1782 bp upstream
Tssr148891	transcription start site region 148891	1662 bp upstream
Tssr148892	transcription start site region 148892	1643 bp upstream
Tssr148893	transcription start site region 148893	1430 bp upstream
Tssr148894	transcription start site region 148894	1358 bp upstream
Tssr148895	transcription start site region 148895	954 bp upstream
Tssr148896	transcription start site region 148896	887 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates