rs107753501 SNP Detail

Summary

• ID
  rs107753501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12456020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC AGAGAGATCT GCCTGTCTCT
  R
  CCTTATGAGT ACCACTGTGT TCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134090398	ENSMUSSNP4608027	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs107753501					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12456020 () rs orientation: forward

Symbol	Name	Function Class
Atp6ap2	ATPase, H+ transporting, lysosomal accessory protein 2	within coordinates
Cpgi22626	CpG island 22626	1692 bp distal
Rr406087	regulatory region 406087	1977 bp downstream
Rr690145	regulatory region 690145	1970 bp distal
Rr690146	regulatory region 690146	1229 bp distal
Rr690147	regulatory region 690147	1803 bp distal
Tssr160561	transcription start site region 160561	1935 bp downstream
Tssr160562	transcription start site region 160562	1904 bp downstream