rs107757038 SNP Detail

Summary

• ID
  rs107757038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80710040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TCTCCCTCTC TCCTCTCTCA
  S
  ACGCGCGCGC ACACACATAC ACACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135384874	ENSMUSSNP561880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320812639	CHEV_3_80606655	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107757038					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80710040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13280	CpG island 13280			1263 bp distal
Cpgi13281	CpG island 13281			within coordinates
Gm66511	predicted gene, 66511			within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			mRNA-UTR
				Noncoding-Transcript-Variant
Rr578666	regulatory region 578666			92 bp proximal
Tssr33765	transcription start site region 33765			132 bp upstream
Tssr33766	transcription start site region 33766			116 bp upstream
Tssr33767	transcription start site region 33767			89 bp upstream
Tssr33768	transcription start site region 33768			61 bp upstream
Tssr33769	transcription start site region 33769			3 bp upstream
Tssr33770	transcription start site region 33770			12 bp downstream
Tssr33771	transcription start site region 33771			56 bp downstream