rs107758797 SNP Detail

Summary

• ID
  rs107758797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACGGTCT TGAGGGGTCT CTCCCGAATG GTCCCCTCGA
  GGGCTCGCCC CCTGACCGCC TCCCGTGCGC GCAGCGTTTG CTCTCTCGTC TACCACGGCC
  M
  GCGCCTCCCC GCTCCGAGTT CGGGGAGGGA TCACGCGGGG CAGAGCCTGT CTGTCGTCCT
  GCCGTTGCTG CGGAGCCATG TGGCTCCGGT TGTGTGGTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385434	CHEV_17_39980979	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107758797					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1137 bp proximal
Rr331227	regulatory region 331227	325 bp distal
Rr331228	regulatory region 331228	76 bp proximal
Rr331229	regulatory region 331229	1076 bp proximal
Rr339832	regulatory region 339832	within coordinates
Tssr148051	transcription start site region 148051	705 bp upstream
Tssr148052	transcription start site region 148052	491 bp upstream
Tssr148053	transcription start site region 148053	385 bp upstream
Tssr148054	transcription start site region 148054	97 bp downstream
Tssr148055	transcription start site region 148055	341 bp downstream
Tssr148056	transcription start site region 148056	683 bp downstream
Tssr148057	transcription start site region 148057	1088 bp downstream
Tssr148058	transcription start site region 148058	1709 bp downstream
Tssr148059	transcription start site region 148059	1744 bp downstream
Tssr148060	transcription start site region 148060	1865 bp downstream
Tssr148061	transcription start site region 148061	1974 bp downstream