rs107759050 SNP Detail

Summary

• ID
  rs107759050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45176917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTGCC AAGCTCCCCA
  GTGGGACAAG AAAGTGATTC CAATCCAGGT GGCCCTGGGG AGCATCATAC CTTTAGTTCT
  GAGAACTTCC GGATGGAAAT CTTGTAAACT CGGAGATCCT TGAAGACTTG TTCGTACTCA
  TCCCCTGCAG GGGTTATCGT GGGCCTGGGG GGATGGATTG TCCCATAGAT GATGCCGTCC
  R
  TTGCTTTCAG AGTCACGCTA TCCACTGTCA GAATCACTAA GTGAGAGACA GGTGAAGACA
  TGAGGGCAAA GGCTAGGGAG AGCATCCAGA GCCTCACTCT AGGATCAAAC CTTTCCAACT
  CTAAAACCTA GACCTCAGGT TTACAGCTCT ACCCCGCATG AGAACATCTT AGAGAATGTG
  TCTTATGGGT CTCTAGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136408213	ENSMUSSNP2088579	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss322942733	CHEV_9_45073702	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107759050					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45176917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il10ra	interleukin 10 receptor, alpha			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Mir7086	microRNA 7086			1024 bp downstream
Tssr84758	transcription start site region 84758			724 bp downstream
Tssr89257	transcription start site region 89257			1429 bp upstream
Tssr89258	transcription start site region 89258			1385 bp upstream
Tssr89259	transcription start site region 89259			1368 bp upstream