rs107759733 SNP Detail

Summary

• ID
  rs107759733
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81253788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAATTGA ATTACAGCCT
  GCCATGGAAC TACCGAGAAA GGAGGGGGTT AATACTGGCC TTCCCCATCT TGTTCTTTGG
  CATAGTCTTC ATTTCTCAAA CATGTCAATT TCCTCCTTCC CATGGCTAGC CCAGCTGGGG
  ACTGCCATCC AAATCTGTCT GTATATGGAA GGACTCCAGC AATTTGGGGG TGGGGTGGGG
  K
  GGGGCAATCG GATACAGTAA TCTTCCTTTG GGAAGTAAAC CTTTTTCTTT TCTGTTCCAA
  CTTGCATCCA AATCTGATTT CTCCTCATGA AGACACTGCA TAATTAATCC TGATAGTAGC
  GTAATACAGG AACAAACTGT AAAAGCTGAC TGTGGAGGCT CAGTTATGGA ATGCTCATTT
  AGGCAGGACA ATTTTGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss131264391	NCBIM37_NT_039649_chr17_81345699	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs107759733					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131264391	NCBIM37_NT_039649_chr17_81345699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81253788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	1111 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	205 bp proximal
Gm65830	predicted gene, 65830	1210 bp upstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates
Tssr145975	transcription start site region 145975	1715 bp downstream
Tssr145976	transcription start site region 145976	1688 bp downstream