rs107763881 SNP Detail

Summary

• ID
  rs107763881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCATATA TACTTTCTGT
  AGTAAGATTT TTAAAAGTTA AATTATCTTT ATAACAACTT TATTGTTATA ATTCTCATGA
  TTAAAATTCA TTTTTTTAAA CTAAACACTT TTTAGTATGT TTACAAATTT ATGTGACATA
  ACCCTACTTA TGCTTTCATT TCCTATAATC TCTTCCTTTA GCCCCAATAT CTGTCCTGTA
  Y
  TCTACTCAGT TAATTATGTT TACCTTCTGG TTACTTTGAA ATTCTATACG AGTTTTAGGA
  TCAACATATC AGTTTTGGTA GAAAAACAGC CAAGAATTTT AATTAGTTTG TTTGGTTACA
  GGCAGGGTGT AACTCATGTT TTCCTAGCTG ATCTTGAATT CTCAAGAGAT CTGTCTGCCT
  ACTAAGGCCT AGCTTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145293417	ENSMUSSNP2804241	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107763881					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815138 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1835 bp downstream
Tssr67723	transcription start site region 67723	382 bp downstream
Tssr67724	transcription start site region 67724	122 bp upstream
Tssr67725	transcription start site region 67725	167 bp upstream
Tssr67726	transcription start site region 67726	180 bp upstream
Tssr67727	transcription start site region 67727	244 bp upstream