rs107768209 SNP Detail

Summary

• ID
  rs107768209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCCAC TACACTGAAG
  CTCTGGTTCT GGGGACCCTA TGTTCTCCTC TACCCCACCT CCCCACTTTC TGGCCTCCAG
  CAACTGCACT TGGAGCAGAC AGACAGATGG GCAGGCAAAA GAGCTCATAC AGAGTAAATA
  AAAAATAAGC AAAAAATGTA ATAAAAATTT TCAGAATACT CACTCCTTTC TGCTCCTAAA
  K
  CGACCACCTT TTTAAAAACA AAATAACCTA CGGGTAAGAG AACTGCTGTA TCCTTTGTCC
  CTCTTCCATT TCTCGGCTAT TACACACCTT CACATTTCTG AAGCACGGCA CCAACATTTA
  TTAGTCCTCA CAACATCCCT GTGAGGTAGG TCAACATGTC CTTTATAGCA GAGAATGGAG
  AAGCCAGAAG AGGCTCTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137771129	ENSMUSSNP2162943	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107768209					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792109 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	509 bp distal
Rr260900	regulatory region 260900	1092 bp proximal
Rr263772	regulatory region 263772	1085 bp distal
Snx6	sorting nexin 6	1015 bp downstream