rs107768252 SNP Detail

Summary

• ID
  rs107768252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGGGGCA CAGCCCAGTC
  TTTGAGAAGC AGAGGTTTAA TCATAAACAG GAATGATCCT GGATTGTCTT TACTAAAATG
  GAGGCTGGCT GGTTCTTTAA GACCTCATGT GTACTAGGCA AGTGCCCTAC CACTGATCAG
  TATTTTCAGG CCTCTATAAA TATCCTATAT TTACTTCTCA GTTATTGTGT TCGTCCGAAG
  R
  GGCTCTAGTA GACCTGAACA TGGCAAACCT AGCTTTGTTA GGCCAGAGCC CTTCTCCTCT
  ATCCCCTCTG CCTTGCTAAA CTGTTAGATT ACATTTCTAA AGCTAGACAC CAAGGTCTCC
  TTCTTACTCT CCCTTGATCC TGCAGAAAAT TATTGTTTTA AACTCATAAA GACTAAGTGA
  GAACTTAACC TAATCCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130844577	NCBIM37_NT_039649_chr17_43704251	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107768252					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130844577	NCBIM37_NT_039649_chr17_43704251	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	1021 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	816 bp upstream
Rr527121	regulatory region 527121	477 bp proximal
Rr527122	regulatory region 527122	978 bp proximal
Tssr144685	transcription start site region 144685	685 bp upstream
Tssr144686	transcription start site region 144686	794 bp upstream
Tssr144687	transcription start site region 144687	850 bp upstream
Tssr144688	transcription start site region 144688	988 bp upstream
Tssr144689	transcription start site region 144689	1145 bp upstream
Tssr144690	transcription start site region 144690	1180 bp upstream
Tssr144691	transcription start site region 144691	1200 bp upstream
Tssr144692	transcription start site region 144692	1256 bp upstream
Tssr144693	transcription start site region 144693	1304 bp upstream
Tssr144694	transcription start site region 144694	1339 bp upstream
Tssr144695	transcription start site region 144695	1387 bp upstream
Tssr144696	transcription start site region 144696	1404 bp upstream
Tssr148130	transcription start site region 148130	1202 bp downstream