rs107768270 SNP Detail

Summary

• ID
  rs107768270
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21696801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCTGGCAGA AGGAACTCAT ACTCGAAATG ATCTGAAGGA
  TCAGATCAGC CTTGGCCTGA GAGTTTGAGC TGGTACACGG ATGGCAGTAG CCTCGAGGTT
  A
  AGGGTAAGCG AAAGGCGGGG ACAGCAGTGC AGTGATGGAC AGAAAGCAAG TGATCTAGGC
  CAGCAGCCTC CCTAAAGGAA CTTCAGCCCA AAAAGCCAAA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss145288391	ENSMUSSNP4700009	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs107768270					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21696801 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	1541 bp downstream
Rr392398	regulatory region 392398	1082 bp upstream
Rr522961	regulatory region 522961	1782 bp distal
Rr522962	regulatory region 522962	1484 bp distal
Rr522963	regulatory region 522963	102 bp distal
Tssr142879	transcription start site region 142879	1617 bp downstream