rs107769372 SNP Detail

Summary

• ID
  rs107769372
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25105139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACGTG AACGCTCACT
  TCAAACTGCC AGCTAATTTT AACAGACACA GAGGAAACTA ACAGAGTAGA TGATCACAGC
  TAAGCGACAC CCGCGCACAA ACGCAGACTC CACACTAGAG ACTTCCAGTT CTAGGGAAGC
  AGGGCCCCCA ATTCTCGGAA AGGCGTGAGG CTGAGGTCTT AGAGCAGATA TAACCGCCGA
  K
  GTGTGCATCG CGACACTCGG CTAGCTCAGT AAACAAGGGG ACATGGGATG CTTTGGCGTG
  GGCCTGCACG CGGTTCGCCT TCAGACTTTC CCAACCCCTC GCGTTTGACC GACCTGCACG
  CTCACCGGCA GCAGCCTCCA TTCCGCTACT AGTTGCTTTT CGCGGCTCTC TTCCGCTTCC
  TCTCCAAACT TTCGCAGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130676974	NCBIM37_NT_039649_chr17_25023110	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107769372					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130676974	NCBIM37_NT_039649_chr17_25023110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25105139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nubp2	nucleotide binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr405096	regulatory region 405096			102 bp upstream
Rr523455	regulatory region 523455			within coordinates
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3			mRNA-UTR
Tssr143106	transcription start site region 143106			194 bp downstream
Tssr143107	transcription start site region 143107			174 bp downstream
Tssr143108	transcription start site region 143108			148 bp downstream
Tssr143109	transcription start site region 143109			130 bp downstream
Tssr143110	transcription start site region 143110			524 bp upstream
Tssr143111	transcription start site region 143111			713 bp upstream
Tssr146788	transcription start site region 146788			295 bp upstream
Tssr146789	transcription start site region 146789			272 bp upstream
Tssr146790	transcription start site region 146790			256 bp upstream
Tssr146791	transcription start site region 146791			220 bp upstream
Tssr146792	transcription start site region 146792			139 bp downstream
Tssr146793	transcription start site region 146793			218 bp downstream