rs107769595 SNP Detail

Summary

• ID
  rs107769595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121913627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATGCAGG AGACGGGTCT CAGAGCTATG ATGGCTCCAA
  CCTCTGGAGG GAGCTGTCCC ACCCTTGTGA TGGGAAATGC ATCTGTCCCC ACTGCCCCTC
  Y
  TCTTCTCTCC TGTCTCTCCT GAAGAGTAAC GTTGGCGTCT GGTTGGTTCA GGTTGTTCGA
  CCAGAGAAGA AAGGGCTCTG GAAAAGACTG AACCCTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135735292	ENSMUSSNP2971413	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320908561	CHEV_3_121822896	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107769595					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121913627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr584235	regulatory region 584235			820 bp distal
Rr584236	regulatory region 584236			43 bp distal
Rr584237	regulatory region 584237			1889 bp proximal