rs107771169 SNP Detail

Summary

• ID
  rs107771169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125994861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAATTTGT CCACAATTCA AAATAGGAGA AATTTAAAGA
  ATATTCCCTT GGGAGGCAAA TCAGCTTAGT GTGTTGGAAA AAGTAGCCTT GTTCCGCCGA
  K
  CTGTGTAGTG CCCCAAAGTT GAGTAGAAAG ATAAGTCCTG GATGCCTTCT ACAGAGTGGT
  TTCAATTTAG TTGATAAGTA TTTGAATCTA TCTAAAAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147495640	ENSMUSSNP2089389	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107771169					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125994861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	342 bp distal
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	937 bp upstream
Rr367293	regulatory region 367293	855 bp downstream
Rr564315	regulatory region 564315	948 bp distal
Rr564316	regulatory region 564316	790 bp distal
Rr564317	regulatory region 564317	794 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	795 bp downstream
Tssr19932	transcription start site region 19932	729 bp downstream
Tssr26028	transcription start site region 26028	980 bp upstream
Tssr26029	transcription start site region 26029	932 bp upstream
Tssr26030	transcription start site region 26030	899 bp upstream