rs107774696 SNP Detail

Summary

• ID
  rs107774696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144104152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGGTCTCCC ACCGTTGCAC TGATTTCCAC ACAAGGCAAT
  GGTAAGAATG TGCCGCCACA GGCAGAGTCA CCCTAGTGGT ATCACAGTGC AATTGCATCT
  R
  GTGTCTCATT TCAGAAGGCA AGGATCTGGA GAAAATTCCA TTGTGGGAAT AAGGAAGCCA
  GTATGCTCAC ATGTTTTATC TCCTATGCAT GGCCACATCC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136030771	ENSMUSSNP1522360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107774696					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144104152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1600 bp distal
Gm65349	predicted gene, 65349	1652 bp upstream
Rr586643	regulatory region 586643	1673 bp distal
Rr586644	regulatory region 586644	1503 bp distal
Rr586645	regulatory region 586645	919 bp proximal
Rr586646	regulatory region 586646	1535 bp proximal
Rr586647	regulatory region 586647	1919 bp proximal