rs107775075 SNP Detail

Summary

• ID
  rs107775075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GGTTGTACCC TAAACTGGAA
  K
  TAAAAAGTAG TAGTGTAAGA GTCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385459	CHEV_17_39986241	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107775075					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160187 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	465 bp distal
Gm26917	predicted gene, 26917	508 bp downstream
Rn18s	18S ribosomal RNA	1095 bp distal
Rn18s-rs5	18s RNA, related sequence 5	1094 bp downstream
Tssr144611	transcription start site region 144611	1958 bp downstream
Tssr144612	transcription start site region 144612	1848 bp downstream
Tssr144613	transcription start site region 144613	1704 bp downstream
Tssr144614	transcription start site region 144614	1682 bp downstream
Tssr144615	transcription start site region 144615	1601 bp downstream
Tssr144616	transcription start site region 144616	1511 bp downstream
Tssr144617	transcription start site region 144617	1484 bp downstream
Tssr144618	transcription start site region 144618	1467 bp downstream
Tssr144619	transcription start site region 144619	1424 bp downstream
Tssr144620	transcription start site region 144620	1401 bp downstream
Tssr144621	transcription start site region 144621	1287 bp downstream
Tssr144622	transcription start site region 144622	1271 bp downstream
Tssr144623	transcription start site region 144623	1241 bp downstream
Tssr144624	transcription start site region 144624	1106 bp downstream
Tssr144625	transcription start site region 144625	1089 bp downstream
Tssr144626	transcription start site region 144626	1060 bp downstream
Tssr144627	transcription start site region 144627	1028 bp downstream
Tssr144628	transcription start site region 144628	869 bp downstream
Tssr144629	transcription start site region 144629	795 bp downstream
Tssr144630	transcription start site region 144630	786 bp downstream
Tssr144631	transcription start site region 144631	689 bp downstream
Tssr144632	transcription start site region 144632	579 bp downstream
Tssr144633	transcription start site region 144633	532 bp downstream
Tssr148065	transcription start site region 148065	1512 bp upstream
Tssr148066	transcription start site region 148066	1435 bp upstream
Tssr148067	transcription start site region 148067	1335 bp upstream
Tssr148068	transcription start site region 148068	1237 bp upstream
Tssr148069	transcription start site region 148069	1054 bp upstream
Tssr148070	transcription start site region 148070	990 bp upstream
Tssr148071	transcription start site region 148071	964 bp upstream
Tssr148072	transcription start site region 148072	636 bp upstream