rs107778992 SNP Detail

Summary

• ID
  rs107778992
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142679752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCACCCCGT GAGCCTGGCA GTGTGCCCAG GCAGCCTGCC
  CCTGCGCTCC CAGGACAGTC CCTACCTCTG TGGCTCCCTT CCTTCTTTCT TTCCTTCCTT
  C
  TTCCCTTTCT TGGCTTTTAT TTTAAAATGT TTTCTTCCCG TTTCTTTGTT TTATTTTTAT
  TTCTTGTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144590561	ENSMUSSNP686363	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107778992					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142679752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16953	CpG island 16953	1460 bp distal
Gm40352	predicted gene, 40352	793 bp upstream
Rr127813	regulatory region 127813	within coordinates
Slc29a4	solute carrier family 29 (nucleoside transporters), member 4	within coordinates
Tssr49584	transcription start site region 49584	1516 bp downstream
Tssr49585	transcription start site region 49585	1495 bp downstream
Tssr49586	transcription start site region 49586	101 bp upstream