rs107779462 SNP Detail

Summary

• ID
  rs107779462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99868705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GGAGGCGATG CCTGTACAGG
  Y
  CTGGAGGCAA TGTCTGTGCA GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132715917	ENSMUSSNP6530220	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323830084	CHEV_11_99839193	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107779462					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99868705 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	146 bp downstream
Tssr110719	transcription start site region 110719	1218 bp downstream