rs107779708 SNP Detail

Summary

• ID
  rs107779708
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACCCAC GTTGCTCTTG
  CCCCTATTAC TGCTGGGTTC TGTGGCTGAA AGGACCCCAA ATGTAAGCAT GAGGCTGTGA
  CTAAGGTTTT CCTGGTTTCT CTCAGGAAAG CATGCAGCAG TCGTTCCCCT AGCTACTGCT
  AGCAGGATTG CAGATACAAG CCCACCTGTG GAGCCATCCA TCCCTCCTGT CCTCCCAGAT
  K
  GGCCACAGCC AGCCAAGATC CAAGTCTGGG GTAAGTCCCA GCTAATGGCA GACTTGGTAG
  GATGGACTTG GAGATAACAT AAGCCTGCTC TGAAACATGC TTTGGGACAG CATGCCTGCC
  AATGTGAGAT GGTTTTATTG TCATGTAACT GCTTTTATTT CATTTTAGAT GGAAGGGGAG
  AGGGAAGGTT GGGTCCTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131326245	NCBIM37_NT_039649_chr17_84589278	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107779708					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131326245	NCBIM37_NT_039649_chr17_84589278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	916 bp distal
Gm36279	predicted gene, 36279	within coordinates
Gm56881	predicted gene, 56881	524 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	835 bp proximal
Rr340271	regulatory region 340271	565 bp distal
Rr405496	regulatory region 405496	1764 bp downstream
Thada	thyroid adenoma associated	138 bp downstream
Tssr146046	transcription start site region 146046	1312 bp downstream
Tssr149672	transcription start site region 149672	1984 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1991 bp upstream