rs107780453 SNP Detail

Summary

• ID
  rs107780453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131195683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCACAATC TACGGTTTAA CCTGTGCCAT TTCAACACCA
  TCACCAAGTA TCCGAAAATG GGTCGCAAAT GAATGAGCAG CAGGCTGGGA GGAGAGACAG
  Y
  CACCAGCTGA CCCCCAGCAG ATGAAAACTG AGCAAGGATG CCCGGGGCGG GGCGGCCTGT
  GGGGAGGCGG TGGCGACCAG AGCCACGTCC CCCACTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135904594	ENSMUSSNP1151069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107780453					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131195683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	within coordinates
Gm36753	predicted gene, 36753	394 bp upstream
Rr585350	regulatory region 585350	1031 bp distal
Rr585351	regulatory region 585351	within coordinates
Rr585352	regulatory region 585352	483 bp proximal
Rr585353	regulatory region 585353	743 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	193 bp downstream
Tssr1056	transcription start site region 1056	83 bp upstream
Tssr31735	transcription start site region 31735	169 bp downstream
Tssr31736	transcription start site region 31736	429 bp upstream
Tssr31737	transcription start site region 31737	1637 bp upstream
Tssr35707	transcription start site region 35707	901 bp upstream
Tssr35708	transcription start site region 35708	872 bp upstream
Tssr35709	transcription start site region 35709	165 bp upstream
Tssr35710	transcription start site region 35710	148 bp upstream
Tssr35711	transcription start site region 35711	within coordinates
Tssr35712	transcription start site region 35712	15 bp downstream
Tssr35713	transcription start site region 35713	256 bp downstream
Tssr35714	transcription start site region 35714	530 bp downstream
Tssr35715	transcription start site region 35715	588 bp downstream
Tssr35716	transcription start site region 35716	731 bp downstream
Tssr35717	transcription start site region 35717	807 bp downstream
Tssr35718	transcription start site region 35718	825 bp downstream
Tssr35719	transcription start site region 35719	1068 bp downstream
Tssr35720	transcription start site region 35720	1131 bp downstream
Tssr35721	transcription start site region 35721	1353 bp downstream
Tssr35722	transcription start site region 35722	1405 bp downstream
Tssr35723	transcription start site region 35723	1464 bp downstream
Tssr35724	transcription start site region 35724	1477 bp downstream
Tssr35725	transcription start site region 35725	1515 bp downstream