rs107782760 SNP Detail

Summary

• ID
  rs107782760
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATACAT ATATGTGTGT
  ATATATATAT ATATATATAT GGTTTTGTCT GTAAATTTGC AAATTTTTCC TTTTATATGT
  GTGTTAGAAA AATAAAGTGT TATTGTTCCA AAAGCATGAT GCTGTGTTCC ATTCATTATG
  AAGGGACAGA CCTGGGGCTT CCAAAACTAT AGGTGTTTTC AGAGAGGGAC AGGCTCCCAG
  M
  AGTCTGCCCT TACCTCTAGA GTATCCATAG CTGGCAGCAT GCTACTAAAT GCTAGCTAGC
  GTCTCTGCCC CCTCCTGTGT GCCCTATTCA CCTGCATCAC TGCGATCGGT CCCAAAGCTA
  CCCTGTGTAA TTCCCCCTAA CCCCAAGTGA ACCAGAACTC AAGTGTGCTA CAACAAAAGA
  AATTTTATTT AAAAATACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391607	ENSMUSSNP5274123	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107782760					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054109 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	164 bp downstream
Mcam	melanoma cell adhesion molecule	85 bp downstream
Rr383290	regulatory region 383290	1459 bp downstream
Rr677565	regulatory region 677565	1309 bp proximal
Rr677566	regulatory region 677566	1636 bp proximal
Rr677567	regulatory region 677567	1729 bp proximal
Tssr89112	transcription start site region 89112	1715 bp downstream
Tssr89113	transcription start site region 89113	1901 bp downstream