rs107785178 SNP Detail

Summary

• ID
  rs107785178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119767723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAAGAA CTGAGTTTTA
  TGAATTGAGC CATTTAAAAT GCCATAAATA GTGTAGAAGA AGCTGCCTTC CACAGTGAAT
  TATTTGATGA CCTAAAGGAA TCAATTTCCT TCTCTCTCCC TTTCCCGTTT TTTTTACGTG
  GGAGCTGTGT TTCACAGACT GAAAGACCAT AACAATGAGT CCAGGATGAG TTTTGGACAC
  K
  GGGGGGGGGG TCTGTTCTGC CTCCATCCTA CATGTTGCTG TGTTCTGGCT CTGCTCCATC
  ATGTCTTTCT TGTTCTGAGG CCATCTTGAT GGCTATCCAA GCAGATGGGG GTGAAGTGAG
  GTGGCCAGTA TGGAGGGTGG CAGAGATGAG CCATTAGTCC TCACCTAGAG CCTTCTCCAT
  GATTGAGGAG ATGGCAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147338393	ENSMUSSNP1834700	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107785178					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119767723 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	1123 bp distal
Rr91833	regulatory region 91833	677 bp proximal
Rr102092	regulatory region 102092	1757 bp proximal
Tssr38760	transcription start site region 38760	1333 bp upstream